PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SRS
Protein Properties Length: 358aa    MW: 39326 Da    PI: 6.7409
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725822genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022251.5e-691152842154
     DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel......kskkqsals 87 
                r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qlaa+  k++++a        +     ++re+        +  sal+
  676725822 115 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAALPVKRNREAssgggddgD-----DDREDeenggkGGDGGSALA 209
                7899*****************************************************998888777678765431.....22222223444667889999 PP

     DUF702  88 stklssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                + ++++a+s+  + +          lP+e+ss+avfrc+rvss+dd++ee+aYqtavsigGhvfkGiLydqG+++
  676725822 210 CIRVVNASSSVIFYFLLklgfdsshLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 284
                9999999998766555456677777***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.7E-64118283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.2E-27234282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSGLFYLGGR DNNKQDHHNH HQDKDHNEDK SNNYLYLYKD EIYNNNKGFE IWPPQYFQQQ  60
QQNHVAPPTN FYSFGMVPSG SSNNNNRSSN RSLYFNVVPD HEPVRSSTGR FTVTRQGSMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA ALPVKRNREA  180
SSGGGDDGDD DREDEENGGK GGDGGSALAC IRVVNASSSV IFYFLLKLGF DSSHLPPEIS  240
SPAVFRCMRV SSIDDEDEEY AYQTAVSIGG HVFKGILYDQ GPSDDHRYSS SPGAAAVETS  300
QHHLNLLAST ASAATTTAVT ASNISNPSID PSSLYTATAA PFNAFITAGT PFFAPPRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895580.0AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641858.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
RefseqXP_013641857.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
RefseqXP_013641856.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
SwissprotQ9FXH70.0SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLA0A078GW490.0A0A078GW49_BRANA; BnaA06g13970D protein
STRINGBra025768.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-154SHI-related sequence 7